Dominique GAGLIARDI

Directeur de recherche / Research director

Équipe : Dégradation des ARN

dominique.gagliardi@ibmp-cnrs.unistra.fr

03 67 15 53 66

Ses publications

GIRAUDO P., SIMONNOT Q., PFLIEGER D., PETER J., GAGLIARDI D. and ZUBER H.

Nano3'RACE: A Method to Analyze Poly(A) Tail Length and Nucleotide Additions at the 3' Extremity of Selected mRNAs Using Nanopore Sequencing.

In: Eugene Valkov, Aaron C. Goldstrohm (eds) Deadenylation. Methods in Molecular Biology, vol 2723. Humana New York, NY., 2024. | DOI : doi: 10.1007/978-1-0716-3481-3_14
POUCLET A., PFLIEGER D., MERRET R., CARPENTIER M.C., SCHIAFFINI M., ZUBER H., GAGLIARDI D. and GARCIA D.

Multi-transcriptomics identifies targets of the endoribonuclease DNE1 and highlights its coordination with decapping

Plant Cell, 1, 2024. | DOI : https://doi.org/10.1093/plcell/koae175
POUCLET A., GAGLIARDI D. and GARCIA D.

No-go decay as a novel route to restrict viral infection in plants

Molecular Plant, NA, 2023. | DOI : https://doi.org/10.1016/j.molp.2023.02.001
JOLY A.C., GARCIA S., HILY J.M., KOECHLER S., DEMANGEAT G., GARCIA D., VIGNE E., LEMAIRE O., ZUBER H. and GAGLIARDI D.

An extensive survey of phytoviral RNA 3' uridylation identifies extreme variations and virus-specific patterns

Plant Physiology, kiad278, 2023. | DOI : 10.1093/plphys/kiad278
KAIROUANI A., PONTIER D., PICART C., MOUNET F., MARTINEZ Y., LE-BOT L., FANUEL M., HAMMANN P., BELMUDES L., MERRET R., AZEVEDO J., CARPENTIER M.C., GAGLIARDI D., COUTÉ Y., SIBOUT R., BIES-ETHEVE N. and LAGRANGE T.

Cell-type-specific control of secondary cell wall formation by Musashi-type translational regulators in Arabidopsis

eLife, 12:RP88207, 2023. | DOI : 10.7554/eLife.88207
LANGE H. and GAGLIARDI D.

Catalytic activities, molecular connections, and biological functions of plant RNA exosome complexes

Plant Cell, 34(3):967–988, 2022. | DOI : 10.1093/plcell/koab310
SCHIAFFINI M., CHICOIS C., POUCLET A., CHARTIER T., UBRIG E., GOBERT A., ZUBER H., MUTTERER J., CHICHER J., KUHN L., HAMMANN P., GAGLIARDI D. and GARCIA D.

A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern

Plant Physiology, 188(2):1174–1188, 2022. | DOI : 10.1093/plphys/kiab529
SCHEER H., DE ALMEIDA C., FERRIER E., SIMONNOT Q., POIRIER L., PFLIEGER D., SEMENT F., KOECHLER S., PIERMARIA C., KRAWCZYK P., MROCZEK S., CHICHER J., KUHN L., DZIEMBOWSKI A., HAMMANN P., ZUBER H. and GAGLIARDI D.

The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis

Nature Communications, 12:1298, 2021. | DOI : 10.1038/s41467-021-21382-2
BAJCZYK M., LANGE H., BIELEWICZ D., SZEWC L., BHAT S.S., DOLATA J., KUHN L., SZWEYKOWSKA-KULINSKA Z., GAGLIARDI D. and JARMOLOWSKI A.

SERRATE Interacts With the Nuclear Exosome Targeting (NEXT) Complex to Degrade Primary miRNA Precursors in Arabidopsis

Nucleic Acids Research, 6839–6854, 2020. | DOI : 10.1093/nar/gkaa373
SCHEER H., DE ALMEIDA C., SIKORSKA N., KOECHLER S., GAGLIARDI D. and ZUBER H.

High-Resolution Mapping of 3’ Extremities of RNA Exosome Substrates by 3’ RACE-Seq

In: LaCava J, Vaňáčová Š (eds) The Eukaryotic RNA Exosome. Methods in Molecular Biology, vol 2062. Humana New York, NY., 2020. | DOI : 10.1007/978-1-4939-9822-7_8
LANGE H., NDECKY S., GOMEZ-DIAZ C., PFLIEGER D., BUTEL N., ZUMSTEG J., KUHN L., PIERMARIA C., CHICHER J., CHRISTIE M., KARAASLAN E.S., LANG P.L., WEIGEL D., VAUCHERET H., HAMMANN P. and GAGLIARDI D.

RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis

Nature Communications, 10:3871, 2019. | DOI : 10.1038/s41467-019-11807-4
CHICOIS C., SCHEER H., GARCIA S., ZUBER H., MUTTERER J., CHICHER J., HAMMANN P., GAGLIARDI D. and GARCIA D.

The UPF1 interactome reveals interaction networks between RNA degradation and translation repression factors in Arabidopsis

Plant Journal, 96:119-132, 2018. | DOI : 10.1111/tpj.14022
DE ALMEIDA C., SCHEER H., ZUBER H. and GAGLIARDI D.

RNA uridylation: a key post-transcriptional modification shaping the coding and non-coding transcriptome

Wiley Interdisciplinary Reviews: RNA, 9(1):e1440, 2018. | DOI : 10.1002/wrna.1440
ZUBER H., SCHEER H., JOLY A.C. and GAGLIARDI D.

Respective contributions of URT1 and HESO1 to the uridylation of 5’ fragments produced from RISC-cleaved mRNAs

Frontiers in Plant Science, 9(1438), 2018. | DOI : 10.3389/fpls.2018.01438
DE ALMEIDA C., SCHEER H., GOBERT A., FILECCIA V., MARTINELLI F., ZUBER H. and GAGLIARDI D.

RNA uridylation and decay in plants

Philosophical Transactions of the Royal Society B: Biological Sciences, , 2018. | DOI : 10.1098/rstb.2018.0163
GAGLIARDI D. and DZIEMBOWSKI A.

5' and 3' modifications controlling RNA degradation: from safeguards to executioners

Philosophical Transactions of the Royal Society B: Biological Sciences, , 2018. | DOI : 10.1098/rstb.2018.0160
SIKORSKA N., ZUBER H., GOBERT A., LANGE H. and GAGLIARDI D.

RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities

Nature Communications, 8:2162, 2017. | DOI : 10.1038/s41467-017-02066-2
SCHEER H., ZUBER H., DE ALMEIDA C. and GAGLIARDI D.

Uridylation earmarks mRNAs for degradation... and more.

Trends in Genetics, 32(10):607-19, 2016. | DOI : 10.1016/j.tig.2016.08.003
ZUBER H., SCHEER H., FERRIER E., SEMENT F.M., MERCIER P., STUPFLER B. and GAGLIARDI D.

Uridylation and PABP cooperate to repair mRNA deadenylated ends in Arabidopsis.

Cell Reports, 14(11):2707-17, 2016. | DOI : 10.1016/j.celrep.2016.02.060
HÉMATY K., BELLEC Y., PODICHETI R., BOUTEILLER N., ANNE P., MORINEAU C., HASLAM R.P., BEAUDOIN F., NAPIER J.A., MOCKAITIS K., GAGLIARDI D., VAUCHERET H., LANGE H. and FAURE J.D.

The zinc-finger protein SOP1 is required for a subset of the nuclear exosome functions in Arabidopsis.

PLoS Genetics, 12(2):e1005817, 2016. | DOI : 10.1371/journal.pgen.1005817
BRANSCHEID A., MARCHAIS A., SCHOTT G., LANGE H., GAGLIARDI D., ANDERSEN S.U., VOINNET O. and BRODERSEN P.

SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis.

Nucleic Acids Research, 43(22):10975-10988, 2015. | DOI : 10.1093/nar/gkv1014
SIKORSKI P.J., ZUBER H., PHILIPPE L., SEMENT F.M., CANADAY J., KUFEL J., GAGLIARDI D. and LANGE H.

Distinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana.

Plant Journal, 83(6):991-1004, 2015. | DOI : 10.1111/tpj.12943
LANGE H., ZUBER H., SEMENT F.M., CHICHER J., KUHN L., HAMMANN P., BRUNAUD V., BÉRARD C., BOUTEILLER N., BALZERGUE S., AUBOURG S., MARTIN-MAGNIETTE M.L., VAUCHERET H. and GAGLIARDI D.

The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana

PLoS Genetics, 10(8):e1004564, 2014. | DOI : 10.1371/journal.pgen.1004564
SEMENT F.M. and GAGLIARDI D.

Detection of uridylated mRNAs.

In: Joanna Rorbach, Agnieszka J. Bobrowicz (eds) Polyadenylation. Methods and protocols, vol 1125. Springer., 2014. | DOI : 10.1007/978-1-62703-971-0_4
SEMENT F.M., FERRIER E., ZUBER H., MERRET R., ALIOUA A., DERAGON J.M., BOUSQUET-ANTONELLI C., LANGE H. and GAGLIARDI D.

Uridylation prevents 3' trimming of oligoadenylated mRNAs

Nucleic Acids Research, 41(14):7115-7127, 2013. | DOI : 10.1093/nar/gkt465
LANGE H., SEMENT F.M. and GAGLIARDI D.

MTR4, a putative RNA helicase and exosome co-factor, is required for proper rRNA biogenesis and development in Arabidopsis thaliana.

Plant Journal, 68(1):51-63, 2011. | DOI : 10.1111/j.1365-313X.2011.04675.x
LANGE H. and GAGLIARDI D.

The exosome and 3' to 5' RNA degradation in plants

In: Jensen T.H. (ed) RNA exosome. Adv Exp Med Biol, vol 702. Landes Bioscience., 2011. | DOI : 10.1007/978-1-4419-7841-7_5
LANGE H., SEMENT F., CANADAY J. and GAGLIARDI D.

Polyadenylation-assisted RNA degradation processes in plants.

Trends in Plant Science, 14(9):497-504, 2009. | DOI : 10.1016/j.tplants.2009.06.007
HOLEC S., LANGE H., CANADAY J. and GAGLIARDI D.

Coping with cryptic and defective transcripts in plant mitochondria.

Biochimica et Biophysica Acta Gene Regulatory Mechanisms, 1779(9):566-73, 2008. | DOI : 10.1016/j.bbagrm.2008.02.004
LANGE H., HOLEC S., COGNAT V., PIEUCHOT L., LE RET M., CANADAY J. and GAGLIARDI D.

Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana.

Molecular and Cellular Biology, 3038-44, 2008. | DOI : 10.1128/MCB.02064-07
HOLEC S., LANGE H., DIETRICH A. and GAGLIARDI D.

Polyadenylation-mediated RNA degradation in plant mitochondria.

Methods in Enzymology, 447:439-62, 2008. | DOI : 10.1016/S0076-6879(08)02221-0
HOLEC S., LANGE H., KÜHN K., BÖRNER T. and GAGLIARDI D.

Relaxed transcription in Arabidopsis mitochondria is counterbalanced by RNA stability control mediated by polyadenylation and polynucleotide phosphorylase.

Molecular and Cellular Biology, 26:2869-76, 2006. | DOI : 10.1128/MCB.26.7.2869-2876.2006
HOLEC S. and GAGLIARDI D.

Importance de la surveillance des ARN dans les mitochondries d’Arabidopsis thaliana.

medecine/sciences, 22:681-82, 2006. | DOI : 10.1051/medsci/20062289681
BOLLENBACH T., GUTIERREZ R., ERHARDT M., STERN D. and GAGLIARDI D.

RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

Plant Journal, 33:2751-2763, 2005. | DOI : 10.1093/nar/gki576
PERRIN R., MEYER E.H., ZAEPFEL M., KIM Y., MACHE R., GRIENENBERGER J.M., GUALBERTO J.M. and GAGLIARDI D.

Two exoribonucleases act sequentially to process mature 3'-ends of atp9 mRNAs in Arabidopsis mitochondria

Journal of Biological Chemistry, 279(24):25440-25446, 2004. | DOI : 10.1074/jbc.M401182200

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