Publications

JOLY A.C., GARCIA S., HILY J.M., KOECHLER S., DEMANGEAT G., GARCIA D., VIGNE E., LEMAIRE O., ZUBER H. and GAGLIARDI D.

An extensive survey of phytoviral RNA 3' uridylation identifies extreme variations and virus-specific patterns

Plant Physiology, kiad278, 2023. | DOI : 10.1093/plphys/kiad278

ARSÈNE-PLOETZE F., ROMPAIS M., ALIOUA A., COGNAT V., ERHARDT M., GRAINDORGE S., KOECHLER S., MUTTERER J., CARAPITO C. and SCHALLER H.

Streptomyces cocklensis DSM 42063 and Actinacidiphila bryophytorum DSM 42138 colonize Arabidopsis thaliana and modulate its proteome

Phytofrontiers, , 2023. | DOI : doi.org/10.1094/PHYTOFR-12-22-0149-R

GRAINDORGE S., VILLETTE C., KOECHLER S., GROH C., COMTET-MARRE S., MERCIER P., MAGERAND R., PEYRET P., HEINTZ D., SCHALLER H. and ARSÈNE-PLOETZE F.

The Arabidopsis thaliana–Streptomyces Interaction Is Controlled by the Metabolic Status of the Holobiont

International Journal of Molecular Sciences, 23:12952, 2022.

SCHEER H., DE ALMEIDA C., FERRIER E., SIMONNOT Q., POIRIER L., PFLIEGER D., SEMENT F., KOECHLER S., PIERMARIA C., KRAWCZYK P., MROCZEK S., CHICHER J., KUHN L., DZIEMBOWSKI A., HAMMANN P., ZUBER H. and GAGLIARDI D.

The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis

Nature Communications, 12:1298, 2021. | DOI : 10.1038/s41467-021-21382-2

FERTET A., GRAINDORGE S., KOECHLER S., DE BOER G.J., GUILLOTEAU-FONTENY E. and GUALBERTO J.M.

Sequence of the mitochondrial genome of Lactuca virosa suggests an unexpected role in Lactuca sativa’s evolution

Frontiers in Plant Science, 12:697136, 2021. | DOI : doi: 10.3389/fpls.2021.697136

MÉTEIGNIER L.V., GHANDOUR R., MEIERHOFF K., ZIMMERMANN A., CHICHER J., BAUMBERGER N., ALIOUA A., MEURER J., ZOSCHKE R. and HAMMANI K.

The Arabidopsis mTERF-repeat MDA1 protein plays a dual function in transcription and stabilization of specific chloroplast transcripts within the psbE and ndhH operons

New Phytologist, 227(5):1376–1391, 2020. | DOI : 10.1111/nph.16625

SCHEER H., DE ALMEIDA C., SIKORSKA N., KOECHLER S., GAGLIARDI D. and ZUBER H.

High-Resolution Mapping of 3’ Extremities of RNA Exosome Substrates by 3’ RACE-Seq

In: LaCava J, Vaňáčová Š (eds) The Eukaryotic RNA Exosome. Methods in Molecular Biology, vol 2062. Humana New York, NY., 2020. | DOI : 10.1007/978-1-4939-9822-7_8

FREEL K.C., FOUTEAU S., ROCHE D., FARASIN J., HUBER A., KOECHLER S., PERES M., CHIBOUB O., VARET H., PROUX C., DESCHAMPS J., BRIANDET R., CRUVEILLER S., LIÈVREMONT D., COPPÉE J.Y., BARBE V. and ARSÈNE-PLOETZE F.

Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2

Microbial Genomics, 6(10):mgen00044, 2020. | DOI : 10.1099/mgen.0.000447

THOMPSON D., COGNAT V., GOODFELLOW M., KOECHLER S., HEINTZ D., CARAPITO C., VAN DORSSELAER A., MAHMOUD H., SANGAL V. and ISMAIL W.

Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-Biodesulfurizing Rhodococcus Strain IGTS8.

Frontiers in Microbiology, 968-974, 2020.

LE RET M., BELCHER S., GRAINDORGE S., WALLET C., KOECHLER S., ERHARDT M., WILLIAMS-CARRIER R., BARKAN A. and GUALBERTO J.M.

An organellar thymidine kinase is required for the efficient replication of the maize plastidial genome.

Plant Physiology, 178:1643-1656, 2018. | DOI : 10.1104/pp.18.00976

BORTOLAMIOL-BÉCET D., MONSION B., CHAPUIS S., HLEIBIEH K., SCHEIDECKER D., ALIOUA A., BOGAERT F., REVERS F., BRAULT V. and ZIEGLER-GRAFF V.

Phloem-triggered virus-induced gene silencing using a recombinant polerovirus

Frontiers in Microbiology, 9:2449, 2018. | DOI : 10.3389/fmicb.2018.02449

CHEN K., DE BORNE F., SIERRO N., IVANOV N., ALIOUA A., KOECHLER S. and OTTEN L.

Organization of the TC and TE cellular T-DNA regions in Nicotiana otophora and functional analysis of three diverged TE-6b genes

Plant Journal, 94:274-287, 2018. | DOI : 10.1111/tpj.13853

FARASIN J., KOECHLER S., VARET H., DESCHAMPS J., DILLIES M.A., PROUX C., ERHARDT M., HUBER A., JAGLA B., BRIANDET R., COPPÉE J.Y. and ARSÈNE-PLOETZE F.

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite.

Microbial Biotechnology, 10(4):789-803, 2017. | DOI : 10.1111/1751-7915.12556

BATZENSCHLAGER M., LERMONTOVA I., SCHUBERT V., FUCHS J., BERR A., KOINI M.A., HOULNÉ G., HERZOG E., RUTTEN T., ALIOUA A., FRANSZ P., SCHMIT A.C. and CHABOUTÉ M.E.

Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture

Proceedings of the National Academy of Sciences of the United States of America, 112(28):8656-8660, 2015. | DOI : 10.1073/pnas.1506351112

FARASIN J., ANDRES J., CASIOT C., BARBE V., FAERBER J., HALTER D., HEINTZ D., KOECHLER S., LIÈVREMONT D., LUGAN R., MARCHAL M., PLEWNIAK F., SEBY F., BERTIN P.N. and ARSÈNE-PLOETZE F.

Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea.

Frontiers in Microbiology, 6:993, 2015. | DOI : 10.3389/fmicb.2015.00993

SEMENT F.M., FERRIER E., ZUBER H., MERRET R., ALIOUA A., DERAGON J.M., BOUSQUET-ANTONELLI C., LANGE H. and GAGLIARDI D.

Uridylation prevents 3' trimming of oligoadenylated mRNAs

Nucleic Acids Research, 41(14):7115-7127, 2013. | DOI : 10.1093/nar/gkt465

SCHOTT G., MARI-ORDONEZ A., HIMBER C., ALIOUA A., VOINNET O. and DUNOYER P.

Differential effects of Viral Silencing Suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1

EMBO Journal, 31:2553-2565, 2012. | DOI : 10.1038/emboj.2012.92

LECHNER E., LEONHARDT N., EISLER H., PARMENTIER Y., ALIOUA A., JACQUET H., LEUNG J. and GENSCHIK P.

MATH/BTB CRL3 receptors target the homeodomain-leucine zipper ATHB6 to modulate abscisic acid signalling.

Developmental Cell, 13:1116-1128, 2011. | DOI : 10.1016/j.devcel.2011.10.018

DUMBLIAUSKAS E., LECHNER E., JACIUBEK M., BERR A., PAZHOUHANDEH M., ALIOUA A., COGNAT V., BRUKHIN V., KONCZ C., GROSSNIKLAUS U., MOLINIER J. and GENSCHIK P.

The Arabidopsis CUL4-DDB1 complex interacts with MSI1 and is required to maintain MEDEA parental imprinting

EMBO Journal, 30:731-743, 2011. | DOI : 10.1038/emboj.2010.359

MOHAJJEL-SHOJA H., CLÉMENT B., PEROT J., ALIOUA A. and OTTEN L.

Biological activity of the Agrobacterium rhizogenes-Derived trolC gene of Nicotiana tabacum and its functional relation to other plast genes.

Molecular Plant-Microbe Interactions, 24:44-53, 2011. | DOI : 10.1094/MPMI-06-10-0139

VAL R., WYSZKO E., VALENTIN C., SZYMANSKI M., COSSET A., ALIOUA A., T.W D., BARCISZEWSKI J. and DIETRICH A.

Organelle trafficking of chimeric ribozymes and genetic manipulation of mitochondria.

Nucleic Acids Research, 39(21):9262-9274, 2011. | DOI : 10.1093/nar/gkr580

JADID N., MIALOUNDAMA A.S., HEINTZ D., AYOUB D., ERHARDT M., MUTTERER J., MEYER D., ALIOUA A., VAN DORSSELAER A., RAHIER A., CAMARA B. and BOUVIER F.

DOLICHOL PHOSPHATE MANNOSE SYNTHASE1 mediates the biogenesis of isoprenyl-linked glycans and influences development, stress response, and ammonium hypersensitivity in Arabidopsis

Plant Cell, 23:1985-2005, 2011. | DOI : 10.1105/tpc.111.083634

ACHARD P., GUSTI A., CHEMINANT S., ALIOUA A., DHONDT S., COPPENS F., BEEMSTER G. and GENSCHIK P.

Gibberellin signaling controls cell proliferation in Arabidopsis

Current Biology, 19:1188-1193, 2009. | DOI : 10.1016/j.cub.2009.05.059

ACHARD P., GONG F., CHEMINANT S., ALIOUA A., HEDDEN P. and GENSCHIK P.

The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism

Plant Cell, 10.1105/tpc.108.058941, 2008. | DOI : 10.1105/tpc.108.058941