Hélène ZUBER

Chargée de recherche / Senior researcher

Publications

  • GIRAUDO P., SIMONNOT Q., PFLIEGER D., PETER J., GAGLIARDI D. and ZUBER H.

    Nano3'RACE: A Method to Analyze Poly(A) Tail Length and Nucleotide Additions at the 3' Extremity of Selected mRNAs Using Nanopore Sequencing.

    In: Eugene Valkov, Aaron C. Goldstrohm (eds) Deadenylation. Methods in Molecular Biology, vol 2723. Humana New York, NY., 2024. | DOI : doi: 10.1007/978-1-0716-3481-3_14DOI logo

  • POUCLET A., PFLIEGER D., MERRET R., CARPENTIER M.C., SCHIAFFINI M., ZUBER H., GAGLIARDI D. and GARCIA D.

    Multi-transcriptomics identifies targets of the endoribonuclease DNE1 and highlights its coordination with decapping

    Plant Cell, 1, 2024. | DOI : https://doi.org/10.1093/plcell/koae175DOI logo

  • KUHN L., VINCENT T., HAMMANN P. and ZUBER H.

    Exploring Protein Interactome Data with IPinquiry: Statistical Analysis and Data Visualization by Spectral Counts

    In: Thomas Burger (ed) Statistical Analysis of Proteomic Data.. Methods in Molecular Biology, vol 2426. Thomas Burger Exploring the Dynamics of Proteomes, Proteomics French Infrastructure, Université Grenoble Alpes, CNRS, CEA, INSERM, Grenoble, France., 2023. | DOI : https://doi.org/10.1007/978-1-0716-1967-4_11DOI logo

  • JOLY A.C., GARCIA S., HILY J.M., KOECHLER S., DEMANGEAT G., GARCIA D., VIGNE E., LEMAIRE O., ZUBER H. and GAGLIARDI D.

    An extensive survey of phytoviral RNA 3' uridylation identifies extreme variations and virus-specific patterns

    Plant Physiology, kiad278, 2023. | DOI : 10.1093/plphys/kiad278DOI logo

  • SCHIAFFINI M., CHICOIS C., POUCLET A., CHARTIER T., UBRIG E., GOBERT A., ZUBER H., MUTTERER J., CHICHER J., KUHN L., HAMMANN P., GAGLIARDI D. and GARCIA D.

    A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern

    Plant Physiology, 188(2):1174–1188, 2022. | DOI : 10.1093/plphys/kiab529DOI logo

  • SCHEER H., DE ALMEIDA C., FERRIER E., SIMONNOT Q., POIRIER L., PFLIEGER D., SEMENT F., KOECHLER S., PIERMARIA C., KRAWCZYK P., MROCZEK S., CHICHER J., KUHN L., DZIEMBOWSKI A., HAMMANN P., ZUBER H. and GAGLIARDI D.

    The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis

    Nature Communications, 12:1298, 2021. | DOI : 10.1038/s41467-021-21382-2DOI logo

  • SCHEER H., DE ALMEIDA C., SIKORSKA N., KOECHLER S., GAGLIARDI D. and ZUBER H.

    High-Resolution Mapping of 3’ Extremities of RNA Exosome Substrates by 3’ RACE-Seq

    In: LaCava J, Vaňáčová Š (eds) The Eukaryotic RNA Exosome. Methods in Molecular Biology, vol 2062. Humana New York, NY., 2020. | DOI : 10.1007/978-1-4939-9822-7_8DOI logo

  • BOUCHOUCHA A., WALTZ F., BONNARD G., ARRIVÉ M., HAMMANN P., KUHN L., SCHELCHER C., ZUBER H., GOBERT A. and GIEGÉ P.

    Determination of protein-only RNase P interactome in Arabidopsis mitochondria and chloroplasts identifies a complex between PRORP1 and another NYN domain nuclease

    Plant Journal, 100(3):549-561, 2019. | DOI : 10.1111/tpj.14458DOI logo

  • CHICOIS C., SCHEER H., GARCIA S., ZUBER H., MUTTERER J., CHICHER J., HAMMANN P., GAGLIARDI D. and GARCIA D.

    The UPF1 interactome reveals interaction networks between RNA degradation and translation repression factors in Arabidopsis

    Plant Journal, 96:119-132, 2018. | DOI : 10.1111/tpj.14022DOI logo

  • DE ALMEIDA C., SCHEER H., ZUBER H. and GAGLIARDI D.

    RNA uridylation: a key post-transcriptional modification shaping the coding and non-coding transcriptome

    Wiley Interdisciplinary Reviews: RNA, 9(1):e1440, 2018. | DOI : 10.1002/wrna.1440DOI logo

  • ZUBER H., SCHEER H., JOLY A.C. and GAGLIARDI D.

    Respective contributions of URT1 and HESO1 to the uridylation of 5’ fragments produced from RISC-cleaved mRNAs

    Frontiers in Plant Science, 9(1438), 2018. | DOI : 10.3389/fpls.2018.01438DOI logo

  • DE ALMEIDA C., SCHEER H., GOBERT A., FILECCIA V., MARTINELLI F., ZUBER H. and GAGLIARDI D.

    RNA uridylation and decay in plants

    Philosophical Transactions of the Royal Society B: Biological Sciences, , 2018. | DOI : 10.1098/rstb.2018.0163DOI logo

  • SIKORSKA N., ZUBER H., GOBERT A., LANGE H. and GAGLIARDI D.

    RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities

    Nature Communications, 8:2162, 2017. | DOI : 10.1038/s41467-017-02066-2DOI logo

  • SCHEER H., ZUBER H., DE ALMEIDA C. and GAGLIARDI D.

    Uridylation earmarks mRNAs for degradation... and more.

    Trends in Genetics, 32(10):607-19, 2016. | DOI : 10.1016/j.tig.2016.08.003DOI logo

  • ZUBER H., SCHEER H., FERRIER E., SEMENT F.M., MERCIER P., STUPFLER B. and GAGLIARDI D.

    Uridylation and PABP cooperate to repair mRNA deadenylated ends in Arabidopsis.

    Cell Reports, 14(11):2707-17, 2016. | DOI : 10.1016/j.celrep.2016.02.060DOI logo

  • SIKORSKI P.J., ZUBER H., PHILIPPE L., SEMENT F.M., CANADAY J., KUFEL J., GAGLIARDI D. and LANGE H.

    Distinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana.

    Plant Journal, 83(6):991-1004, 2015. | DOI : 10.1111/tpj.12943DOI logo

  • LANGE H., ZUBER H., SEMENT F.M., CHICHER J., KUHN L., HAMMANN P., BRUNAUD V., BÉRARD C., BOUTEILLER N., BALZERGUE S., AUBOURG S., MARTIN-MAGNIETTE M.L., VAUCHERET H. and GAGLIARDI D.

    The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana

    PLoS Genetics, 10(8):e1004564, 2014. | DOI : 10.1371/journal.pgen.1004564DOI logo

  • SEMENT F.M., FERRIER E., ZUBER H., MERRET R., ALIOUA A., DERAGON J.M., BOUSQUET-ANTONELLI C., LANGE H. and GAGLIARDI D.

    Uridylation prevents 3' trimming of oligoadenylated mRNAs

    Nucleic Acids Research, 41(14):7115-7127, 2013. | DOI : 10.1093/nar/gkt465DOI logo

  • ZUBER H., POIGNAVENT G., LE SIGNOR C., AIMÉ D., VIEREN E., TADLA C., LUGAN R., BELGHAZI M., LABAS V., SANTONI A.L., WIPF D., BUITINK J., AVICE J.C., SALON C. and GALLARDO K.

    Legume adaptation to sulfur deficiency revealed by comparing nutrient allocation and seed traits in Medicago truncatula

    Plant Journal, 76:982-996, 2013. | DOI : 10.1111/tpj.12350DOI logo