Hélène ZUBER

Publications

• GIRAUDO P., SIMONNOT Q., PFLIEGER D., PETER J., GAGLIARDI D. and ZUBER H.

  Nano3'RACE: A Method to Analyze Poly(A) Tail Length and Nucleotide Additions at the 3' Extremity of Selected mRNAs Using Nanopore Sequencing.

  In: Eugene Valkov, Aaron C. Goldstrohm (eds) Deadenylation. Methods in Molecular Biology, vol 2723. Humana New York, NY., 2024. | DOI : doi: 10.1007/978-1-0716-3481-3_14

• POUCLET A., PFLIEGER D., MERRET R., CARPENTIER M.C., SCHIAFFINI M., ZUBER H., GAGLIARDI D. and GARCIA D.

  Multi-transcriptomics identifies targets of the endoribonuclease DNE1 and highlights its coordination with decapping

  Plant Cell, 1, 2024. | DOI : https://doi.org/10.1093/plcell/koae175

• KUHN L., VINCENT T., HAMMANN P. and ZUBER H.

  Exploring Protein Interactome Data with IPinquiry: Statistical Analysis and Data Visualization by Spectral Counts

  In: Thomas Burger (ed) Statistical Analysis of Proteomic Data.. Methods in Molecular Biology, vol 2426. Thomas Burger Exploring the Dynamics of Proteomes, Proteomics French Infrastructure, Université Grenoble Alpes, CNRS, CEA, INSERM, Grenoble, France., 2023. | DOI : https://doi.org/10.1007/978-1-0716-1967-4_11

• JOLY A.C., GARCIA S., HILY J.M., KOECHLER S., DEMANGEAT G., GARCIA D., VIGNE E., LEMAIRE O., ZUBER H. and GAGLIARDI D.

  An extensive survey of phytoviral RNA 3' uridylation identifies extreme variations and virus-specific patterns

  Plant Physiology, kiad278, 2023. | DOI : 10.1093/plphys/kiad278

• SCHIAFFINI M., CHICOIS C., POUCLET A., CHARTIER T., UBRIG E., GOBERT A., ZUBER H., MUTTERER J., CHICHER J., KUHN L., HAMMANN P., GAGLIARDI D. and GARCIA D.

  A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern

  Plant Physiology, 188(2):1174–1188, 2022. | DOI : 10.1093/plphys/kiab529

• SCHEER H., DE ALMEIDA C., FERRIER E., SIMONNOT Q., POIRIER L., PFLIEGER D., SEMENT F., KOECHLER S., PIERMARIA C., KRAWCZYK P., MROCZEK S., CHICHER J., KUHN L., DZIEMBOWSKI A., HAMMANN P., ZUBER H. and GAGLIARDI D.

  The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis

  Nature Communications, 12:1298, 2021. | DOI : 10.1038/s41467-021-21382-2

• SCHEER H., DE ALMEIDA C., SIKORSKA N., KOECHLER S., GAGLIARDI D. and ZUBER H.

  High-Resolution Mapping of 3’ Extremities of RNA Exosome Substrates by 3’ RACE-Seq

  In: LaCava J, Vaňáčová Š (eds) The Eukaryotic RNA Exosome. Methods in Molecular Biology, vol 2062. Humana New York, NY., 2020. | DOI : 10.1007/978-1-4939-9822-7_8

• BOUCHOUCHA A., WALTZ F., BONNARD G., ARRIVÉ M., HAMMANN P., KUHN L., SCHELCHER C., ZUBER H., GOBERT A. and GIEGÉ P.

  Determination of protein-only RNase P interactome in Arabidopsis mitochondria and chloroplasts identifies a complex between PRORP1 and another NYN domain nuclease

  Plant Journal, 100(3):549-561, 2019. | DOI : 10.1111/tpj.14458

• CHICOIS C., SCHEER H., GARCIA S., ZUBER H., MUTTERER J., CHICHER J., HAMMANN P., GAGLIARDI D. and GARCIA D.

  The UPF1 interactome reveals interaction networks between RNA degradation and translation repression factors in Arabidopsis

  Plant Journal, 96:119-132, 2018. | DOI : 10.1111/tpj.14022

• DE ALMEIDA C., SCHEER H., ZUBER H. and GAGLIARDI D.

  RNA uridylation: a key post-transcriptional modification shaping the coding and non-coding transcriptome

  Wiley Interdisciplinary Reviews: RNA, 9(1):e1440, 2018. | DOI : 10.1002/wrna.1440

• ZUBER H., SCHEER H., JOLY A.C. and GAGLIARDI D.

  Respective contributions of URT1 and HESO1 to the uridylation of 5’ fragments produced from RISC-cleaved mRNAs

  Frontiers in Plant Science, 9(1438), 2018. | DOI : 10.3389/fpls.2018.01438

• DE ALMEIDA C., SCHEER H., GOBERT A., FILECCIA V., MARTINELLI F., ZUBER H. and GAGLIARDI D.

  RNA uridylation and decay in plants

  Philosophical Transactions of the Royal Society B: Biological Sciences, , 2018. | DOI : 10.1098/rstb.2018.0163

• SIKORSKA N., ZUBER H., GOBERT A., LANGE H. and GAGLIARDI D.

  RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities

  Nature Communications, 8:2162, 2017. | DOI : 10.1038/s41467-017-02066-2

• SCHEER H., ZUBER H., DE ALMEIDA C. and GAGLIARDI D.

  Uridylation earmarks mRNAs for degradation... and more.

  Trends in Genetics, 32(10):607-19, 2016. | DOI : 10.1016/j.tig.2016.08.003

• ZUBER H., SCHEER H., FERRIER E., SEMENT F.M., MERCIER P., STUPFLER B. and GAGLIARDI D.

  Uridylation and PABP cooperate to repair mRNA deadenylated ends in Arabidopsis.

  Cell Reports, 14(11):2707-17, 2016. | DOI : 10.1016/j.celrep.2016.02.060

• SIKORSKI P.J., ZUBER H., PHILIPPE L., SEMENT F.M., CANADAY J., KUFEL J., GAGLIARDI D. and LANGE H.

  Distinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana.

  Plant Journal, 83(6):991-1004, 2015. | DOI : 10.1111/tpj.12943

• LANGE H., ZUBER H., SEMENT F.M., CHICHER J., KUHN L., HAMMANN P., BRUNAUD V., BÉRARD C., BOUTEILLER N., BALZERGUE S., AUBOURG S., MARTIN-MAGNIETTE M.L., VAUCHERET H. and GAGLIARDI D.

  The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana

  PLoS Genetics, 10(8):e1004564, 2014. | DOI : 10.1371/journal.pgen.1004564

• SEMENT F.M., FERRIER E., ZUBER H., MERRET R., ALIOUA A., DERAGON J.M., BOUSQUET-ANTONELLI C., LANGE H. and GAGLIARDI D.

  Uridylation prevents 3' trimming of oligoadenylated mRNAs

  Nucleic Acids Research, 41(14):7115-7127, 2013. | DOI : 10.1093/nar/gkt465

• ZUBER H., POIGNAVENT G., LE SIGNOR C., AIMÉ D., VIEREN E., TADLA C., LUGAN R., BELGHAZI M., LABAS V., SANTONI A.L., WIPF D., BUITINK J., AVICE J.C., SALON C. and GALLARDO K.

  Legume adaptation to sulfur deficiency revealed by comparing nutrient allocation and seed traits in Medicago truncatula

  Plant Journal, 76:982-996, 2013. | DOI : 10.1111/tpj.12350