Dominique GAGLIARDI

Directeur de recherche / Research director

Publications

  • SCHEER H., DE ALMEIDA C., FERRIER E., SIMONNOT Q., POIRIER L., PFLIEGER D., SEMENT F., KOECHLER S., PIERMARIA C., KRAWCZYK P., MROCZEK S., CHICHER J., KUHN L., DZIEMBOWSKI A., HAMMANN P., ZUBER H. and GAGLIARDI D.

    The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis

    Nature Communications, 12:1298, 2021. | DOI : 10.1038/s41467-021-21382-2DOI logo

  • BAJCZYK M., LANGE H., BIELEWICZ D., SZEWC L., BHAT S.S., DOLATA J., KUHN L., SZWEYKOWSKA-KULINSKA Z., GAGLIARDI D. and JARMOLOWSKI A.

    SERRATE Interacts With the Nuclear Exosome Targeting (NEXT) Complex to Degrade Primary miRNA Precursors in Arabidopsis

    Nucleic Acids Research, 6839–6854, 2020. | DOI : 10.1093/nar/gkaa373DOI logo

  • SCHEER H., DE ALMEIDA C., SIKORSKA N., KOECHLER S., GAGLIARDI D. and ZUBER H.

    High-Resolution Mapping of 3’ Extremities of RNA Exosome Substrates by 3’ RACE-Seq

    In: LaCava J, Vaňáčová Š (eds) The Eukaryotic RNA Exosome. Methods in Molecular Biology, vol 2062. Humana New York, NY., 2020. | DOI : 10.1007/978-1-4939-9822-7_8DOI logo

  • LANGE H., NDECKY S., GOMEZ-DIAZ C., PFLIEGER D., BUTEL N., ZUMSTEG J., KUHN L., PIERMARIA C., CHICHER J., CHRISTIE M., KARAASLAN E.S., LANG P.L., WEIGEL D., VAUCHERET H., HAMMANN P. and GAGLIARDI D.

    RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis

    Nature Communications, 10:3871, 2019. | DOI : 10.1038/s41467-019-11807-4DOI logo

  • CHICOIS C., SCHEER H., GARCIA S., ZUBER H., MUTTERER J., CHICHER J., HAMMANN P., GAGLIARDI D. and GARCIA D.

    The UPF1 interactome reveals interaction networks between RNA degradation and translation repression factors in Arabidopsis

    Plant Journal, 96:119-132, 2018. | DOI : 10.1111/tpj.14022DOI logo

  • DE ALMEIDA C., SCHEER H., ZUBER H. and GAGLIARDI D.

    RNA uridylation: a key post-transcriptional modification shaping the coding and non-coding transcriptome

    Wiley Interdisciplinary Reviews: RNA, 9(1):e1440, 2018. | DOI : 10.1002/wrna.1440DOI logo

  • ZUBER H., SCHEER H., JOLY A.C. and GAGLIARDI D.

    Respective contributions of URT1 and HESO1 to the uridylation of 5’ fragments produced from RISC-cleaved mRNAs

    Frontiers in Plant Science, 9(1438), 2018. | DOI : 10.3389/fpls.2018.01438DOI logo

  • DE ALMEIDA C., SCHEER H., GOBERT A., FILECCIA V., MARTINELLI F., ZUBER H. and GAGLIARDI D.

    RNA uridylation and decay in plants

    Philosophical Transactions of the Royal Society B: Biological Sciences, , 2018. | DOI : 10.1098/rstb.2018.0163DOI logo

  • GAGLIARDI D. and DZIEMBOWSKI A.

    5' and 3' modifications controlling RNA degradation: from safeguards to executioners

    Philosophical Transactions of the Royal Society B: Biological Sciences, , 2018. | DOI : 10.1098/rstb.2018.0160DOI logo

  • SIKORSKA N., ZUBER H., GOBERT A., LANGE H. and GAGLIARDI D.

    RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities

    Nature Communications, 8:2162, 2017. | DOI : 10.1038/s41467-017-02066-2DOI logo

  • SCHEER H., ZUBER H., DE ALMEIDA C. and GAGLIARDI D.

    Uridylation earmarks mRNAs for degradation... and more.

    Trends in Genetics, 32(10):607-19, 2016. | DOI : 10.1016/j.tig.2016.08.003DOI logo

  • ZUBER H., SCHEER H., FERRIER E., SEMENT F.M., MERCIER P., STUPFLER B. and GAGLIARDI D.

    Uridylation and PABP cooperate to repair mRNA deadenylated ends in Arabidopsis.

    Cell Reports, 14(11):2707-17, 2016. | DOI : 10.1016/j.celrep.2016.02.060DOI logo

  • HÉMATY K., BELLEC Y., PODICHETI R., BOUTEILLER N., ANNE P., MORINEAU C., HASLAM R.P., BEAUDOIN F., NAPIER J.A., MOCKAITIS K., GAGLIARDI D., VAUCHERET H., LANGE H. and FAURE J.D.

    The zinc-finger protein SOP1 is required for a subset of the nuclear exosome functions in Arabidopsis.

    PLoS Genetics, 12(2):e1005817, 2016. | DOI : 10.1371/journal.pgen.1005817DOI logo

  • BRANSCHEID A., MARCHAIS A., SCHOTT G., LANGE H., GAGLIARDI D., ANDERSEN S.U., VOINNET O. and BRODERSEN P.

    SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis.

    Nucleic Acids Research, 43(22):10975-10988, 2015. | DOI : 10.1093/nar/gkv1014DOI logo

  • SIKORSKI P.J., ZUBER H., PHILIPPE L., SEMENT F.M., CANADAY J., KUFEL J., GAGLIARDI D. and LANGE H.

    Distinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana.

    Plant Journal, 83(6):991-1004, 2015. | DOI : 10.1111/tpj.12943DOI logo

  • LANGE H., ZUBER H., SEMENT F.M., CHICHER J., KUHN L., HAMMANN P., BRUNAUD V., BÉRARD C., BOUTEILLER N., BALZERGUE S., AUBOURG S., MARTIN-MAGNIETTE M.L., VAUCHERET H. and GAGLIARDI D.

    The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana

    PLoS Genetics, 10(8):e1004564, 2014. | DOI : 10.1371/journal.pgen.1004564DOI logo

  • SEMENT F.M. and GAGLIARDI D.

    Detection of uridylated mRNAs.

    In: Joanna Rorbach, Agnieszka J. Bobrowicz (eds) Polyadenylation. Methods and protocols, vol 1125. Springer., 2014. | DOI : 10.1007/978-1-62703-971-0_4DOI logo

  • SEMENT F.M., FERRIER E., ZUBER H., MERRET R., ALIOUA A., DERAGON J.M., BOUSQUET-ANTONELLI C., LANGE H. and GAGLIARDI D.

    Uridylation prevents 3' trimming of oligoadenylated mRNAs

    Nucleic Acids Research, 41(14):7115-7127, 2013. | DOI : 10.1093/nar/gkt465DOI logo

  • LANGE H., SEMENT F.M. and GAGLIARDI D.

    MTR4, a putative RNA helicase and exosome co-factor, is required for proper rRNA biogenesis and development in Arabidopsis thaliana.

    Plant Journal, 68(1):51-63, 2011. | DOI : 10.1111/j.1365-313X.2011.04675.xDOI logo

  • LANGE H. and GAGLIARDI D.

    The exosome and 3' to 5' RNA degradation in plants

    In: Jensen T.H. (ed) RNA exosome. Adv Exp Med Biol, vol 702. Landes Bioscience., 2011. | DOI : 10.1007/978-1-4419-7841-7_5DOI logo

  • LANGE H., SEMENT F., CANADAY J. and GAGLIARDI D.

    Polyadenylation-assisted RNA degradation processes in plants.

    Trends in Plant Science, 14(9):497-504, 2009. | DOI : 10.1016/j.tplants.2009.06.007DOI logo

  • HOLEC S., LANGE H., CANADAY J. and GAGLIARDI D.

    Coping with cryptic and defective transcripts in plant mitochondria.

    Biochimica et Biophysica Acta Gene Regulatory Mechanisms, 1779(9):566-73, 2008. | DOI : 10.1016/j.bbagrm.2008.02.004DOI logo

  • LANGE H., HOLEC S., COGNAT V., PIEUCHOT L., LE RET M., CANADAY J. and GAGLIARDI D.

    Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana.

    Molecular and Cellular Biology, 3038-44, 2008. | DOI : 10.1128/MCB.02064-07DOI logo

  • HOLEC S., LANGE H., DIETRICH A. and GAGLIARDI D.

    Polyadenylation-mediated RNA degradation in plant mitochondria.

    Methods in Enzymology, 447:439-62, 2008. | DOI : 10.1016/S0076-6879(08)02221-0DOI logo

  • HOLEC S., LANGE H., KÜHN K., BÖRNER T. and GAGLIARDI D.

    Relaxed transcription in Arabidopsis mitochondria is counterbalanced by RNA stability control mediated by polyadenylation and polynucleotide phosphorylase.

    Molecular and Cellular Biology, 26:2869-76, 2006. | DOI : 10.1128/MCB.26.7.2869-2876.2006DOI logo

  • HOLEC S. and GAGLIARDI D.

    Importance de la surveillance des ARN dans les mitochondries d’Arabidopsis thaliana.

    medecine/sciences, 22:681-82, 2006. | DOI : 10.1051/medsci/20062289681DOI logo

  • BOLLENBACH T., GUTIERREZ R., ERHARDT M., STERN D. and GAGLIARDI D.

    RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

    Plant Journal, 33:2751-2763, 2005. | DOI : 10.1093/nar/gki576DOI logo

  • PERRIN R., MEYER E.H., ZAEPFEL M., KIM Y., MACHE R., GRIENENBERGER J.M., GUALBERTO J.M. and GAGLIARDI D.

    Two exoribonucleases act sequentially to process mature 3'-ends of atp9 mRNAs in Arabidopsis mitochondria

    Journal of Biological Chemistry, 279(24):25440-25446, 2004. | DOI : 10.1074/jbc.M401182200DOI logo